Introduction

WebAlign is an online tool for spatial registration of histological section images from rodent brains to reference 3D atlases. Different experimental datasets registered to the same reference atlas allows you to spatially integrate, analyse and navigate these datasets within a standardised coordinate system. The linear registration obtained with WebAlign can be refined with the WebWarp tool (https://webwarp.readthedocs.io/en/latest/).

These registration tools can be used as individual webapps in the EBRAINS collaboratory or integrated in the QUINT workflow, accessible here: Online Workbench, register for an EBRAINS account and login.

Find manual for the online QUINT workflow here: https://quint-webtools.readthedocs.io/en/latest/

This user manual will guide through the steps for working in the collaboratory.

Dataset DOI: 10.25493/G6CQ-D4D